Gross pay and taxable wages are different
Gross pay is the starting amount earned for the pay period. Federal income-tax wages, Social Security wages, and Medicare wages can differ after deductions are classified. A traditional 401(k) contribution commonly reduces federal income-tax wages while remaining subject to Social Security and Medicare; some qualifying Section 125 benefits can reduce both.
See the gross-vs-net-pay walkthrough
W-4 fields do not all work the same way
Form W-4 Step 3, Step 4(a), and Step 4(b) are annual inputs used inside the federal withholding method. Step 4(c), by contrast, is an additional dollar amount withheld each pay period. PayCalc models these fields separately so a yearly credit is not accidentally treated as a per-check adjustment.
Understand W-4 withholding inputs
Year-to-date wages matter near FICA thresholds
For 2026, Social Security withholding stops after covered wages reach the annual wage base, while ordinary Medicare continues without the same cap. Additional Medicare withholding also depends on year-to-date wages. Entering prior wages is therefore important when modeling a paycheck near those thresholds.
Read the Social Security and Medicare guide
Bonuses can use a different federal method
Separately identified supplemental wages can be withheld using methods that differ from regular wages. The optional federal flat method is not the same thing as the employee's final income-tax rate, and Social Security, Medicare, state, and local taxes may still apply.
Learn how bonus withholding works
Why the result can differ from an employer's payroll system
An employer may know facts that a public calculator does not: exact year-to-date wages, benefit-plan tax treatment, local residence and work rules, reciprocity certificates, garnishments, employer-paid premiums, prior supplemental wages, and payroll-specific rounding. Use PayCalc as a transparent planning estimate, then reconcile a real paycheck by comparing gross wages, each taxable-wage base, each tax line, deductions, and net pay rather than comparing only the final deposit.